Correctly scaling and placing atom labels is one of the most difficult parts of writing a chemical structure editor. With its latest preview release, ChemWriter 2 has crossed this barrier.
As you can see from the screenshot, we've got a lot of the functionality in place now, but there's still some work to do. For example, implicit hydrogens and charges are not displayed. And if you look carefully, you'll notice that atom labels are slightly off-center, to the right, along the x-axis. Fortunately, we have a lightweight, fully-functional chemical structure editor written in Java (ChemWriter 1.x) from which to port additional features and refinements.
If you've signed up for the demo, atom labels can be added by hovering over an atom of interest and using the same element keyboard shortcuts introduced in ChemWriter 1.x. We'll be introducing the ability to add elements from the rest of the periodic table shortly.
If you're looking for a Web-based structure editor designed for the future but runnable today, I'd like to hear from you.