Painless Installation of Ruby Open Babel
Open Babel 2.1.0 has just been released. Among its new features is a Ruby interface containing most of the functionality of the C++ library. Installation is quick and easy, as shown in this article.
In addition to a working build system, you'll need Ruby and the Ruby development libraries. Although any recent version should do, this tutorial was written with version 1.8.5.
Step 0: Compile and Install Open Babel
Given the right tools on your system, compiling and and installing Open Babel from source is trivial. This page gives instructions for doing so on Linux, Windows, and Mac OS X.
Step 1: Create the Wrapper's Makefile
After unpacking, compiling, and installing Open Babel, change into the scripts/ruby directory of your source distribution. Next, run the extconf.rb script:
ruby extconf.rb checking for main() in -lopenbabel... yes creating Makefile
As you've probably guessed, the purpose of this script is to generate a Makefile specific to your platform. This script uses the standard Ruby library mkmf.
Step 2: Compile the Wrapper
After creating a Makefile, we're ready to compile the C++ Ruby wrapper, contained in openbabel_ruby.cpp:
make g++ -I. -I. -I/usr/lib/ruby/1.8/x86_64-linux-gnu -I. -I../../include -fPIC -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -Wall -fPIC -c openbabel_ruby.cpp
This output will be followed by other lines as the compiler builds the wrapper library.
Step 3: Install the Wrapper
After compiling the wrapper, we're ready to install it. You can probably guess that the next command will be (as root):
make install /usr/bin/install -c -m 0755 openbabel.so /usr/lib/ruby/site_ruby/1.8/x86_64-linux-gnu
Your install directory is chosen by Ruby to be appropriate for your platform and Ruby version.
Congratulations, you've installed Ruby Open Babel! You can verify that your new library works with interactive Ruby (irb):
irb irb(main):001:0> require 'openbabel' => true irb(main):002:0> c=OpenBabel::OBConversion.new => #<OpenBabel::OBConversion:0x2acedbadd020> irb(main):003:0> c.set_in_format 'smi' => true irb(main):004:0> benzene=OpenBabel::OBMol.new => #<OpenBabel::OBMol:0x2acedbacfa10> irb(main):005:0> c.read_string benzene, 'c1ccccc1' => true irb(main):006:0> benzene.num_atoms => 6