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    <title>Depth-First: Simple Installation of Rubidium</title>
    <link>http://depth-first.com/articles/2007/11/21/simple-installation-of-rubidium</link>
    <language>en-us</language>
    <ttl>40</ttl>
    <description>Walking the Web of Chemical Informatics</description>
    <item>
      <title>Simple Installation of Rubidium</title>
      <description>&lt;p&gt;&lt;a href="http://rbtk.rubyforge.org/"&gt;&lt;img src="http://depth-first.com/demo/20071015/rubidium.png" align="right"&gt;&lt;/img&gt;&lt;/a&gt;&lt;a href="http://rbtk.rubyforge.org/"&gt;Rubidium&lt;/a&gt; is a Ruby cheminformatics scripting environment. Previously, &lt;a href="http://depth-first.com/articles/2007/11/12/parsing-sd-files-with-ruby-and-rubidium"&gt;a problem&lt;/a&gt; was reported with the RubyForge gem repository that prevented the simple installation of the Rubidium gem. After filing a &lt;a href="http://rubyforge.org/tracker/index.php?func=detail&amp;amp;aid=15665&amp;amp;group_id=5&amp;amp;atid=101"&gt;bug report&lt;/a&gt;, the problem was resolved.&lt;/p&gt;

&lt;p&gt;The problem, which led to a 404 being issued when trying to install the gem from the remote RubyGems repository, was a variant of a &lt;a href="http://rubyforge.org/tracker/index.php?func=detail&amp;amp;aid=15417&amp;amp;group_id=5&amp;amp;atid=102"&gt;known RubyForge issue&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;You can now install Rubidium like this:&lt;/p&gt;

&lt;div class="console"&gt;
&lt;pre&gt;
$ jruby -S gem install rbtk
&lt;/pre&gt;
&lt;/div&gt;

&lt;p&gt;Installation takes a few minutes due to the large size of the included &lt;a href="http://cdk.sf.net"&gt;Chemistry Development Kit&lt;/a&gt; jarfile.&lt;/p&gt;</description>
      <pubDate>Wed, 21 Nov 2007 09:26:00 +0000</pubDate>
      <guid isPermaLink="false">urn:uuid:f0a52354-e6aa-4a02-b329-4b5271486940</guid>
      <author>Rich Apodaca</author>
      <link>http://depth-first.com/articles/2007/11/21/simple-installation-of-rubidium</link>
      <category>Tools</category>
      <category>rubidium</category>
      <category>ruby</category>
      <category>jruby</category>
      <category>cdk</category>
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