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    <title>Depth-First: Yet Another Free Chemistry Database: Heterocycles Web Edition</title>
    <link>http://depth-first.com/articles/2007/07/06/yet-another-free-chemistry-database-heterocycles-web-edition</link>
    <language>en-us</language>
    <ttl>40</ttl>
    <description>Walking the Web of Chemical Informatics</description>
    <item>
      <title>Yet Another Free Chemistry Database: Heterocycles Web Edition</title>
      <description>&lt;p&gt;Yet another &lt;a href="http://depth-first.com/articles/2007/01/24/thirty-two-free-chemistry-databases"&gt;free chemistry database&lt;/a&gt; comes in the form of a service run by the journal &lt;a href="https://www2.heterocycles.jp"&gt;&lt;em&gt;Heterocycles&lt;/em&gt;&lt;/a&gt;. The &lt;a href="https://www2.heterocycles.jp/journal/index.html"&gt;Heterocycles Web Edition&lt;/a&gt; offers two ways to search for heterocylic ring systems: &lt;a href="https://www2.heterocycles.jp/FMPro?-db=gate.fp5&amp;amp;-format=/w2/structure.html&amp;amp;-view"&gt;by structure&lt;/a&gt; or &lt;a href="https://www2.heterocycles.jp/FMPro?-db=gate.fp5&amp;amp;-format=/w2/synthesis.html&amp;amp;-view"&gt;by synthesis&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;You may assume that these services would only search the contents of &lt;em&gt;Heterocycles&lt;/em&gt;. It would then be a pleasant surprise to find a number of highly-regarded journals being covered. Here are some of titles:&lt;/p&gt;

&lt;ul&gt;
&lt;li&gt;Angew. Chem. Int. Ed. Engl.&lt;/li&gt;
&lt;li&gt;Chem. Eur. J.&lt;/li&gt;
&lt;li&gt;Eur. J. Org. Chem.&lt;/li&gt;
&lt;li&gt;Heterocycles&lt;/li&gt;
&lt;li&gt;J. Am. Chem. Soc.&lt;/li&gt;
&lt;li&gt;J. Med. Chem.&lt;/li&gt;
&lt;li&gt;J. Nat. Prod. &lt;/li&gt;
&lt;li&gt;J. Org. Chem.&lt;/li&gt;
&lt;li&gt;Org. Lett.&lt;/li&gt;
&lt;li&gt;Synlett&lt;/li&gt;
&lt;li&gt;Tetrahedron&lt;/li&gt;
&lt;li&gt;Tetrahedron Lett.&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;The current query interface supports text only, although a number of important criteria can be used. I haven't searched for many heterocyles, but my results for &lt;em&gt;indolizidine&lt;/em&gt; give a flavor for what you might expect (the actual number of hits was 115):&lt;/p&gt;

&lt;p&gt;&lt;center&gt;&lt;img src="http://depth-first.com/demo/20070706/screenshot.png"&gt;&lt;/img&gt;&lt;/center&gt;&lt;/p&gt;

&lt;p&gt;It would be interesting to know how &lt;em&gt;Heterocycles&lt;/em&gt; populated its database. Is it text-mining, manual curation, both, or something else? Regardless of how it's done, Heterocycles Web Edition is definitely worth looking at.&lt;/p&gt;</description>
      <pubDate>Fri, 06 Jul 2007 09:57:00 -0400</pubDate>
      <guid isPermaLink="false">urn:uuid:d980f37e-fd7b-42a7-9a8f-7662064c5cd0</guid>
      <author>Rich Apodaca</author>
      <link>http://depth-first.com/articles/2007/07/06/yet-another-free-chemistry-database-heterocycles-web-edition</link>
      <category>Databases</category>
      <category>database</category>
      <category>free</category>
      <category>internet</category>
      <category>heterocycles</category>
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