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The Octet Molecular Representation Framework v0.8.2
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Hierarchy For All Packages
Package Hierarchies:
net.sf.octet.builder
,
net.sf.octet.collection
,
net.sf.octet.error
,
net.sf.octet.model
,
net.sf.octet.query
,
net.sf.octet.task
,
net.sf.octet.test
,
net.sf.octet.traversal
,
net.sf.octet.util
,
net.sf.octet.xml
Class Hierarchy
class java.lang.Object
class net.sf.octet.builder.
AbstractRepresentationBuilder
(implements net.sf.octet.builder.
RepresentationBuilder
)
class net.sf.octet.builder.
AbstractMoleculeBuilder
(implements net.sf.octet.builder.
RepresentationBuilder
)
class net.sf.octet.builder.
AbstractRepresentationBuilder.AtomTemplate
(implements net.sf.octet.builder.
AtomProxy
)
class net.sf.octet.builder.
AbstractRepresentationBuilder.BondingSystemTemplate
(implements net.sf.octet.builder.
BondingSystemProxy
)
class net.sf.octet.builder.
AbstractRepresentationBuilder.ConfigurationTemplate
(implements net.sf.octet.builder.
ConfigurationProxy
)
class net.sf.octet.builder.
AbstractRepresentationBuilder.ConformationTemplate
class net.sf.octet.builder.
AbstractRepresentationBuilder.GammaSequenceTemplate
(implements net.sf.octet.builder.
GammaSequenceProxy
)
class net.sf.octet.builder.
AbstractRepresentationBuilder.HalfPlaneTemplate
(implements net.sf.octet.builder.
HalfPlaneProxy
)
class net.sf.octet.builder.
AbstractRepresentationBuilder.OrbitalTemplate
(implements net.sf.octet.builder.
OrbitalProxy
)
class net.sf.octet.builder.
AbstractRepresentationBuilder.PaddleWheelTemplate
class net.sf.octet.query.
AllCyclesMoleculeQuery
(implements net.sf.octet.query.
MoleculeQuery
)
class net.sf.octet.util.
ArrayKit
class net.sf.octet.util.
ArraySequence
(implements net.sf.octet.util.
Sequence
)
class junit.framework.Assert
class junit.framework.TestCase (implements junit.framework.Test)
class net.sf.octet.test.
OctetTestCase
class net.sf.octet.test.
AllCyclesQueryTest
class net.sf.octet.test.
AntibondingElectronsTest
class net.sf.octet.test.
AtomGraphTest
class net.sf.octet.test.
AtomicSystemTest
class net.sf.octet.test.
AtomPairTest
class net.sf.octet.test.
BreadthTraverserTest
class net.sf.octet.test.
CollectionsTest
class net.sf.octet.test.
ConfigurationTest
class net.sf.octet.test.
ConformationTest
class net.sf.octet.test.
CycleSystemTraverserTest
class net.sf.octet.test.
CycleTraverserTest
class net.sf.octet.test.
DepthTraverserTest
class net.sf.octet.test.
FlexMolHandlerTest
class net.sf.octet.test.
FlexMolRoundTripTest
class net.sf.octet.test.
ImplicitHydrogenTest
class net.sf.octet.test.
IsomorphismTest
class net.sf.octet.test.
MolecularMassTest
class net.sf.octet.test.
MoleculeBuilderTest
class net.sf.octet.test.
MoleculeConvertorTest
class net.sf.octet.test.
MoleculeQueryBuilderTest
class net.sf.octet.test.
MoleculeTest
class net.sf.octet.test.
NonbondingValenceElectronsTest
class net.sf.octet.test.
OrderedSetTest
class net.sf.octet.test.
QueryTest
class net.sf.octet.test.
SequenceTest
class net.sf.octet.test.
StereoTest
class net.sf.octet.model.
AtomGraphDecorator
(implements net.sf.octet.model.
AtomGraph
)
class net.sf.octet.model.
BasicBondingSystem
(implements net.sf.octet.model.
BondingSystem
)
class net.sf.octet.model.
BasicGammaSequence
(implements net.sf.octet.model.
GammaSequence
)
class net.sf.octet.collection.
BasicAtomCollection
(implements net.sf.octet.collection.
AtomCollection
)
class net.sf.octet.model.
BasicAtomGraph
(implements net.sf.octet.model.
AtomGraph
)
class net.sf.octet.collection.
BasicAtomGraphCollection
(implements net.sf.octet.collection.
AtomGraphCollection
)
class net.sf.octet.collection.
BasicAtomicSymbolCollection
(implements net.sf.octet.collection.
AtomicSymbolCollection
)
class net.sf.octet.model.
BasicAtomicSystem
(implements net.sf.octet.model.
AtomicSystem
)
class net.sf.octet.collection.
BasicAtomMap
(implements net.sf.octet.collection.
AtomMap
)
class net.sf.octet.model.
BasicAtomPair
(implements net.sf.octet.model.
AtomPair
)
class net.sf.octet.collection.
BasicAtomPairCollection
(implements net.sf.octet.collection.
AtomPairCollection
)
class net.sf.octet.collection.
BasicBondingSystemCollection
(implements net.sf.octet.collection.
BondingSystemCollection
)
class net.sf.octet.traversal.
BasicBreadthTraverser
(implements net.sf.octet.traversal.
BreadthTraverser
)
class net.sf.octet.model.
BasicConfiguration
(implements net.sf.octet.model.
Configuration
)
class net.sf.octet.query.
BasicConfigurationComparator
(implements net.sf.octet.query.
ConfigurationComparator
)
class net.sf.octet.model.
BasicConformation
(implements net.sf.octet.model.
Conformation
)
class net.sf.octet.query.
BasicConformationComparator
(implements net.sf.octet.query.
ConformationComparator
)
class net.sf.octet.traversal.
BasicCycleSystemTraverser
(implements net.sf.octet.traversal.
CycleSystemTraverser
)
class net.sf.octet.traversal.
BasicDepthTraverser
(implements net.sf.octet.traversal.
DepthTraverser
)
class net.sf.octet.model.
BasicElectron
(implements net.sf.octet.model.
Electron
)
class net.sf.octet.collection.
BasicElectronCollection
(implements net.sf.octet.collection.
ElectronCollection
)
class net.sf.octet.model.
BasicOrbital
(implements net.sf.octet.model.
Orbital
)
class net.sf.octet.xml.
BasicFlexMolHandler
(implements net.sf.octet.xml.
FlexMolHandler
)
class net.sf.octet.xml.
BasicFlexMolWriter
(implements net.sf.octet.xml.
FlexMolWriter
)
class net.sf.octet.collection.
BasicGammaSequenceCollection
(implements net.sf.octet.collection.
GammaSequenceCollection
)
class net.sf.octet.model.
BasicHalfPlane
(implements net.sf.octet.model.
HalfPlane
)
class net.sf.octet.collection.
BasicHalfPlaneCollection
(implements net.sf.octet.collection.
HalfPlaneCollection
)
class net.sf.octet.util.
BasicMeasurement
(implements net.sf.octet.util.
Measurement
)
class net.sf.octet.builder.
BasicMoleculeBuilder
(implements net.sf.octet.builder.
MoleculeBuilder
)
class net.sf.octet.model.
BasicMoleculeConvertor
(implements net.sf.octet.model.
MoleculeConvertor
)
class net.sf.octet.query.
BasicMoleculeQueryBuilder
(implements net.sf.octet.query.
MoleculeQueryBuilder
)
class net.sf.octet.model.
BasicNonbondingShell
(implements net.sf.octet.model.
NonbondingShell
)
class net.sf.octet.collection.
BasicNucleusCollection
(implements net.sf.octet.collection.
NucleusCollection
)
class net.sf.octet.collection.
BasicOrbitalCollection
(implements net.sf.octet.collection.
OrbitalCollection
)
class net.sf.octet.model.
BasicPaddleWheel
(implements net.sf.octet.model.
PaddleWheel
)
class net.sf.octet.collection.
BasicPaddleWheelCollection
(implements net.sf.octet.collection.
PaddleWheelCollection
)
class net.sf.octet.query.
BasicPaddleWheelComparator
(implements net.sf.octet.query.
PaddleWheelComparator
)
class net.sf.octet.traversal.
BasicTraversalHandler
(implements net.sf.octet.traversal.
TraversalHandler
)
class net.sf.octet.query.
BilateralQueryStrategy
(implements net.sf.octet.query.
MoleculeQueryStrategy
)
class net.sf.octet.util.
BuilderKit
class net.sf.octet.query.
CachedMoleculeQuery
(implements net.sf.octet.query.
MoleculeQuery
)
class net.sf.octet.util.
CollectionKit
class net.sf.octet.test.
CompleteTest
class net.sf.octet.traversal.
HanserCycleTraverser
(implements net.sf.octet.traversal.
CycleTraverser
)
class net.sf.octet.model.
MoleculeDecorator
(implements net.sf.octet.model.
Molecule
)
class net.sf.octet.util.
MoleculeKit
class net.sf.octet.util.
MoleculePrinter
class net.sf.octet.util.
OrderedSet
(implements java.util.List, java.util.Set)
class net.sf.octet.query.
PaddleWheelInvertor
(implements net.sf.octet.model.
PaddleWheel
)
class net.sf.octet.traversal.
PrintingHandler
(implements net.sf.octet.traversal.
TraversalHandler
)
class org.apache.tools.ant.ProjectComponent
class org.apache.tools.ant.Task
class net.sf.octet.task.
WriteFlexMolExamples
class net.sf.octet.util.
RepresentationKit
class net.sf.octet.model.
SimpleBondingSystem
(implements net.sf.octet.model.
BondingSystem
)
class net.sf.octet.model.
SimpleHalfPlane
(implements net.sf.octet.model.
HalfPlane
)
class net.sf.octet.util.
StringFragmenter
class net.sf.octet.util.
StringKit
class net.sf.octet.query.
TemplateAtomQuery
(implements net.sf.octet.query.
AtomQuery
)
class net.sf.octet.query.
TemplateMoleculeQuery
(implements net.sf.octet.query.
MoleculeQuery
)
class java.lang.Throwable (implements java.io.Serializable)
class java.lang.Exception
class java.lang.RuntimeException
class net.sf.octet.error.
IllegalRepresentationException
class net.sf.octet.error.
InvalidAtomMapException
class net.sf.octet.error.
NoSuchAtomException
class net.sf.octet.error.
NoSuchAtomicSymbolException
class net.sf.octet.error.
NoSuchAtomPairException
class net.sf.octet.error.
NoSuchBondingSystemException
class net.sf.octet.error.
NoSuchGammaSequenceException
class net.sf.octet.error.
NoSuchNucleusException
class net.sf.octet.error.
NoSuchPaddleWheelException
class net.sf.octet.error.
NoSuchProxyException
class net.sf.octet.traversal.
UllmanIsomorphismTraverser
(implements net.sf.octet.traversal.
IsomorphismTraverser
)
class net.sf.octet.query.
UnilateralQueryStrategy
(implements net.sf.octet.query.
MoleculeQueryStrategy
)
class net.sf.octet.query.
WildcardAtomQuery
(implements net.sf.octet.query.
AtomQuery
)
class org.xml.sax.helpers.XMLFilterImpl (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler, org.xml.sax.XMLFilter)
class net.sf.octet.xml.
XMLWriter
class net.sf.octet.xml.
DataWriter
Interface Hierarchy
interface net.sf.octet.model.
Atom
interface net.sf.octet.collection.
AtomCollection
interface net.sf.octet.model.
AtomGraph
(also extends net.sf.octet.collection.
AtomPairCollection
)
interface net.sf.octet.model.
BondingSystem
interface net.sf.octet.model.
GammaSequence
interface net.sf.octet.model.
Molecule
(also extends net.sf.octet.collection.
BondingSystemCollection
)
interface net.sf.octet.collection.
AtomGraphCollection
interface net.sf.octet.collection.
AtomGraphIterator
interface net.sf.octet.model.
AtomicSymbol
interface net.sf.octet.collection.
AtomicSymbolCollection
interface net.sf.octet.model.
AtomicSystem
interface net.sf.octet.collection.
AtomicSymbolIterator
interface net.sf.octet.collection.
AtomIterator
interface net.sf.octet.collection.
AtomMap
interface net.sf.octet.model.
AtomPair
interface net.sf.octet.collection.
AtomPairCollection
interface net.sf.octet.model.
AtomGraph
(also extends net.sf.octet.collection.
AtomCollection
)
interface net.sf.octet.model.
BondingSystem
interface net.sf.octet.model.
GammaSequence
interface net.sf.octet.model.
Molecule
(also extends net.sf.octet.collection.
BondingSystemCollection
)
interface net.sf.octet.collection.
AtomPairIterator
interface net.sf.octet.builder.
AtomProxy
interface net.sf.octet.query.
AtomQuery
interface net.sf.octet.collection.
BondingSystemCollection
interface net.sf.octet.model.
Molecule
(also extends net.sf.octet.model.
AtomGraph
)
interface net.sf.octet.collection.
BondingSystemIterator
interface net.sf.octet.builder.
BondingSystemProxy
interface net.sf.octet.traversal.
BreadthTraverser
interface net.sf.octet.query.
ConfigurationComparator
interface net.sf.octet.query.
MoleculeQueryStrategy
(also extends net.sf.octet.query.
ConformationComparator
, net.sf.octet.traversal.
IsomorphismTraverser
)
interface net.sf.octet.builder.
ConfigurationProxy
interface net.sf.octet.query.
ConformationComparator
interface net.sf.octet.query.
MoleculeQueryStrategy
(also extends net.sf.octet.query.
ConfigurationComparator
, net.sf.octet.traversal.
IsomorphismTraverser
)
interface org.xml.sax.ContentHandler
interface net.sf.octet.xml.
FlexMolHandler
interface net.sf.octet.traversal.
CycleSystemTraverser
interface net.sf.octet.traversal.
CycleTraverser
interface net.sf.octet.traversal.
DepthTraverser
interface net.sf.octet.model.
Electron
interface net.sf.octet.collection.
ElectronCollection
interface net.sf.octet.model.
NonbondingShell
(also extends net.sf.octet.collection.
OrbitalCollection
)
interface net.sf.octet.model.
Orbital
interface net.sf.octet.collection.
ElectronIterator
interface net.sf.octet.xml.
ForeignContent
interface net.sf.octet.collection.
GammaSequenceCollection
interface net.sf.octet.model.
Conformation
(also extends net.sf.octet.collection.
PaddleWheelCollection
)
interface net.sf.octet.collection.
GammaSequenceIterator
interface net.sf.octet.builder.
GammaSequenceProxy
interface net.sf.octet.model.
HalfPlane
interface net.sf.octet.collection.
HalfPlaneCollection
interface net.sf.octet.model.
PaddleWheel
interface net.sf.octet.collection.
HalfPlaneIterator
interface net.sf.octet.builder.
HalfPlaneProxy
interface net.sf.octet.traversal.
IsomorphismTraverser
interface net.sf.octet.query.
MoleculeQueryStrategy
(also extends net.sf.octet.query.
ConfigurationComparator
, net.sf.octet.query.
ConformationComparator
)
interface net.sf.octet.util.
Measurement
interface net.sf.octet.model.
MoleculeConvertor
interface net.sf.octet.query.
MoleculeQuery
interface net.sf.octet.model.
Nucleus
interface net.sf.octet.collection.
NucleusCollection
interface net.sf.octet.model.
IsotopicDistribution
interface net.sf.octet.collection.
NucleusIterator
interface net.sf.octet.collection.
OrbitalCollection
interface net.sf.octet.model.
NonbondingShell
(also extends net.sf.octet.collection.
ElectronCollection
)
interface net.sf.octet.collection.
OrbitalIterator
interface net.sf.octet.builder.
OrbitalProxy
interface net.sf.octet.collection.
PaddleWheelCollection
interface net.sf.octet.model.
Configuration
interface net.sf.octet.model.
Conformation
(also extends net.sf.octet.collection.
GammaSequenceCollection
)
interface net.sf.octet.query.
PaddleWheelComparator
interface net.sf.octet.collection.
PaddleWheelIterator
interface net.sf.octet.builder.
RepresentationBuilder
interface net.sf.octet.xml.
FlexMolWriter
interface net.sf.octet.builder.
MoleculeBuilder
interface net.sf.octet.query.
MoleculeQueryBuilder
interface net.sf.octet.util.
Sequence
interface net.sf.octet.traversal.
TraversalHandler
interface net.sf.octet.traversal.
BreadthTraverser.Handler
interface net.sf.octet.traversal.
CycleSystemTraverser.Handler
interface net.sf.octet.traversal.
CycleTraverser.Handler
interface net.sf.octet.traversal.
DepthTraverser.Handler
interface net.sf.octet.traversal.
IsomorphismTraverser.Handler
Overview
Package
Class
Tree
Deprecated
Index
Help
The Octet Molecular Representation Framework v0.8.2
PREV NEXT
FRAMES
NO FRAMES
All Classes