net.sf.octet.test
Class MoleculeBuilderTest

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          net.sf.octet.test.OctetTestCase
              net.sf.octet.test.MoleculeBuilderTest

All Implemented Interfaces:

junit.framework.Test

public class MoleculeBuilderTest

extends OctetTestCase

Tests the functionality of BasicMoleculeBuilder.

Author:

Richard Apodaca

Constructor Summary

MoleculeBuilderTest()
Default constructor.

Method Summary

void	testConnectAtomsTwiceInSameBondingSystem() Verifies that an IllegalRepresentationException is thrown in response to connecting two AtomProxies through the same BondingSystemProxy twice.
void	testUseInvalidProxyDuringAddGammaSequence() Verifies that BasicMoleculeBuilder throws a NoSuchProxyException during addGammaSequence.
void	testUseInvalidProxyDuringConnect() Verifies that BasicMoleculeBuilder throws a NoSuchProxyException when an invalid BondingSystemProxy or GammaSequenceProxy are used.
void	testUseInvalidProxyDuringIonize() Verifies that BasicMoleculeBuilder throws a NoSuchProxyException during ionizeAtom or ionizeBondingSystem.
void	testUseInvalidProxyDuringShareElectrons() Verifies that BasicMoleculeBuilder throws a NoSuchProxyException during shareElectrons.
void	testUseStringsForAtomLabels() Verifies that a pyridine moleucule built by using MoleculeKit convenience methods produces the same molecule as obtained with RepresentationKit.

Methods inherited from class net.sf.octet.test.OctetTestCase

getMoleculeBuilder

Methods inherited from class junit.framework.TestCase

countTestCases, createResult, getName, run, run, runBare, runTest, setName, setUp, tearDown, toString

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MoleculeBuilderTest

public MoleculeBuilderTest()

Default constructor.

Method Detail

testUseInvalidProxyDuringConnect

public void testUseInvalidProxyDuringConnect()

Verifies that BasicMoleculeBuilder throws a NoSuchProxyException when an invalid BondingSystemProxy or GammaSequenceProxy are used.

testUseInvalidProxyDuringIonize

public void testUseInvalidProxyDuringIonize()

Verifies that BasicMoleculeBuilder throws a NoSuchProxyException during ionizeAtom or ionizeBondingSystem.

testUseInvalidProxyDuringShareElectrons

public void testUseInvalidProxyDuringShareElectrons()

Verifies that BasicMoleculeBuilder throws a NoSuchProxyException during shareElectrons.

testUseInvalidProxyDuringAddGammaSequence

public void testUseInvalidProxyDuringAddGammaSequence()

Verifies that BasicMoleculeBuilder throws a NoSuchProxyException during addGammaSequence.

testConnectAtomsTwiceInSameBondingSystem

public void testConnectAtomsTwiceInSameBondingSystem()

Verifies that an IllegalRepresentationException is thrown in response to connecting two AtomProxies through the same BondingSystemProxy twice.

testUseStringsForAtomLabels

public void testUseStringsForAtomLabels()

Verifies that a pyridine moleucule built by using MoleculeKit convenience methods produces the same molecule as obtained with RepresentationKit.