Package net.sf.octet.query

Molecular query support.

See:
Description

Interface Summary

AtomQuery	The root interface for all Atom queries.
ConfigurationComparator	A comparator of Configuration.
ConformationComparator	A comparator of Conformations.
MoleculeQuery	A Molecule query.
MoleculeQueryBuilder	A builder of MoleculeQueries.
MoleculeQueryStrategy	A strategy for MoleculeQueries.
PaddleWheelComparator	A comparator of PaddleWheels.

Class Summary

AllCyclesMoleculeQuery	Queries the set of all cycles in a Molecule.
BasicConfigurationComparator	A default implementation of the ConfigurationComparator interface.
BasicConformationComparator	A default implementation of the ConformationComparator interface.
BasicMoleculeQueryBuilder	A default implementation of the MoleculeQueryBuilder interface.
BasicPaddleWheelComparator	A default implementation of the PaddleWheelComparator interface.
BilateralQueryStrategy	A MoleculeQueryStrategy consistent with exact structure matching.
CachedMoleculeQuery	An implementation of the MoleculeQuery interface that enables query results to be cached to improve performance.
PaddleWheelInvertor	Inverts the polarity of the PaddleWheel that it decorates.
TemplateAtomQuery	An implementation of the AtomQuery interface in which an existing Atom is used as a template for comparing other Atoms.
TemplateMoleculeQuery	A query that uses a Molecule as a template.
UnilateralQueryStrategy	A MoleculeQueryStrategy that is consistent with substructure searches.
WildcardAtomQuery	An implementation of AtomQuery that matches all Atoms.

Package net.sf.octet.query Description

Molecular query support.

Package Specification